FlashDEG is a fast, lightweight implementation of the DESeq2 algorithm for bulk RNA-seq differential expression analysis. This package provides the FlashDEG command-line engine and desktop GUI for x86_64 Windows systems.
Publisher’s description
What is FlashDEG?
FlashDEG by WinNGS is open-source Windows software. It is written in C++.
Installation and requirements
The publisher provides MSI installers for 64-bit Windows. Installation asks for administrator rights. A silent install is possible with the installer’s documented switches. An MSI package is available for deployment with Group Policy, Intune or Configuration Manager.
Project description on GitHub: “Fast cross-platform C/C++ implementation of the DESeq2 algorithm”
Pros / Cons
Pros
- Open source: the code can be inspected and built by anyone
- MSI package for managed deployment
- Documented silent install
Cons
- No native ARM64 build
- Installation needs administrator rights
In short: FlashDEG is an open-source Windows tool for 64-bit PCs. Administrators can deploy it unattended.
Is FlashDEG safe to download?
- The file is served by github.com, the publisher’s own domain
- The download link uses HTTPS
- A SHA256 hash is published, so you can verify the file:
A922272FCF6367C25C1EE60549A202F72579810D1538CEC519F7E4BC71729CE5· Open the VirusTotal report for this hash - The link has not been checked yet
- The source code is public
- ExeAtlas does not host, wrap or modify installers
Related guide: How to check a file’s SHA256 hash on Windows
Recent versions
All 1 versions ›| Version | Date | Size | Files |
|---|---|---|---|
| 1.1.0Latest | June 26, 2026 | — | 64-bit MSI |
Install from the command line
Silent install ›winget install --id WinNGS.FlashDEG -emsiexec /i flashdeg-1.1.0-windows-x86_64.msi /qn /norestart /qnmsiexec /x {27D6B43F-5E96-4995-956B-D84B7CBD88E4} /qn /norestartProgram files (.exe): flashdeg.exe, flashdeg-gui.exe
Related guide: How to use winget: install and update apps
Information
- Publisher
- WinNGS
- Licence
- MIT
- Price
- Free
- Source code
- github.com/tus-kondolab/flashdeg
- Written in
- C++
- Requires
- Windows 11 / 10
- Architecture
- 64-bit
- Installer
- MSI
- Version
- 1.1.0
- Released
- June 26, 2026
- Added to the catalogue
- June 26, 2026
- Versions listed
- 1
- Website
- github.com
- winget ID
- WinNGS.FlashDEG
- MSI product code
- {27D6B43F-5E96-4995-956B-D84B7CBD88E4}
Ratings and reviews
No reviews yet. Be the first to rate it.
Frequently asked questions
Is FlashDEG free?
Yes. FlashDEG is open-source software under the MIT licence.
Is FlashDEG safe to download?
The download comes from github.com, which belongs to the publisher; ExeAtlas does not host or change the file. Compare its SHA256 hash with the one shown here, or open the VirusTotal report for that hash.
How do I install FlashDEG with winget?
Open PowerShell or Windows Terminal and run the winget command shown on this page. winget downloads the official installer and checks its SHA256 hash before running it.
Can FlashDEG be installed silently?
Yes. The silent install page lists the exact command for each installer, including msiexec for the MSI package.
Does FlashDEG run on ARM (Windows on Arm)?
There is no ARM64 build; Windows 11 on Arm can run the 64-bit version through emulation.
