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AlignCli: all versions and old releases

A command line interface for easily aligning sequences.

3 versions of AlignCli are listed here, from February 27, 2024 to the current 0.4.2. Each one links to the publisher’s own installer files.

2024: 1 1 24 2025: 1 1 25 2026: 1 1 26

3 versions over 2 years · about 1.2 a year

VersionDateSizeFiles
0.4.2Latest August 4, 2026 — 64-bit Portable
Release notes
- Added --either-global
- Added PAM30MS scoring matrix
- Updated modification display with parents and children and updated cross IDs
- Display accession number for IMGT entries
- Added mass-based multiple sequence alignment, both when feeding a single PSM file and when given multiple sequences as arguments
- Added CSV export
- Added pair modes, which gives control over how modifications are scored
0.4.1 April 16, 2025 — 64-bit Portable
Release notes
- Added --full-number to display numbers with more precision
- Added --formula <number> to search for molecular formulas with a mass that rounds to the given target
- Highlights potential N-glycan sites in the alignment
- Added --display-fasta to easily export IMGT
- Updated search result display
- Added more control for precise parameters for the alignment
- Display annotations for annotated fasta files
- Added ability to generate annotations based on --domain
- Updated to rustyms 0.10.0
(Recreation of the version with a fixed action script, hopefully)
0.4.0 February 27, 2024 — 64-bit Portable

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