Download COPASI Build-298

New Features since COPASI 4.44 (Build 295)
- Graphical User Interface (CopasiUI)
- Added a new tool which attempts to convert ODEs into reactions.
- Added a menu entry which allows definition and subsequent execution of user defined tools.
- Standards
- SBML Import added an option determining how to handle the import of initial values initial references.
Bug Fixes and Enhancements since COPASI 4.44 (Build 295)
- Graphical User Interface (CopasiUI)
- Optimization and Parameter Estimation: Whether to display the population dynamics is now part of the problem specification.
- Fixed deletion of plots in the plot overview.
- Fixed issue where event targets where not longer added to plots, reports, and time series.
- Fixed crash occurring when switching the plot engine to: Qt DataVizualization (surface) for non surface plots.
- Improved labels for surface plots which where limited to 2 decimal digits.
- Fixed problem with notes of global quantities occurring when copying.
- Time course Method Hybrid (RK-45): Selecting the partitioning strategy: user defined and selecting the deterministic reactions caused a crash.
- Fixed delay during start on some Windows 11 installations caused while saving the known MIRIAM resources.
- Functions: It is not longer permitted to copy mass action kinetics.
- Fixed crash occurring when repeatedly deleting parameter sets.
- Fixed problem deleting multiple global quantities.
- Fixed crash when deleting interdependent global quantities.
- Command Line (CopasiSE)
- The argument to the option --report-file is now taken relative to the current working directory.
- Steady-State: Added warning message indicating that no steady-state was found.
- Simulation Engine
- MCA: Fixed scaling for small compartment volumes.
- Steady-State: Fixed occasionally occurring problem calculating the target criterions for models containing moieties, which lead to not finding a steady-state.
- Events: Fixed crash caused by invalid trigger expression.
- Time Course: Fixed output of all steps when the duration is negative.
- Parameter Estimation: Non existing constraint objects will lead to a warning message.
- Standards
- SED-ML: Improved import of time course option initial time and number of points.
- SBML: Improved import of reaction IDs used in multiple assignments.
- SBML: Improved import of files containing reaction kinetics with missing parameters.